Legacy Documentation - PHG Version 1
This section contains documentation for PHG version 1, which is no longer actively developed. It is preserved here for archival and historical reference only. If you are looking to use the Practical Haplotype Graph, please refer to the PHG v2 documentation, which reflects the current version of the software.
Tune pathfinding parameters¶
This process does not currently exist, but when it does this page will walk users through common parameters to tune to produce the best variant calls from the PHG (e.g. minReads, taxa, transition probabilities)